Selected Publications (until 2009)

A model of sequential branching in hierarchical cell fate determination
David V. Foster, Jacob G. Foster, Sui Huang and Stuart A. Kauffman
Journal of Theoretical Biology (in press)
(July 15 , 2009)

Random sampling versus exact enumeration of attractors in random Boolean networks
Andrew Berdahl, Amer Shreim, Vishal Sood, Maya Paczuski and Jörn Davidsen
New Journal of Physics 11, 043024
(April 23, 2009)

Extreme value statistics and return intervals in long-range correlated uniform deviates.
Nicholas R. Moloney and Jörn Davidsen
Physical Review E 79, 041131
(21 April, 2009)

Reinforced Walks in Two and Three Dimensions
Jacob G. Foster, Peter Grassberger and Maya Paczuski
New Journal of Physics 11
(February 4 , 2009)

Filament-induced surface spiral turbulence 
Jörn Davidsen, Meng Zhan and Raymond Kapral 
Physical Review Letters 101, 208302
(November 11, 2008)

Sequence alignment and mutual information.
O. Penner, P. Grassberger, and M. Paczuski
Under review. arXiv:0810.4355
(October 23, 2008)

Network of recurrent events for the Olami-Feder-Christensen model.
Tiago P. Peixoto and Jörn Davidsen
Physical Review E 77, 066107
(June 10, 2008)

Networks of recurrent events, a theory of records, and an application to finding causal signatures in seismicity.
Jörn Davidsen, Peter Grassberger, and Maya Paczuski
Physical Review E 77, 066104
(June 6, 2008)

Avalanches, branching ratios, and clustering of attractors in random boolean networks and in the segment polarity network of Drosophila.
Andrew Berdahl, Amer Shreim, Vishal Sood, Jörn Davidsen, and Maya Paczuski
New Journal of Physics 10, 063002
(June 3, 2008)

Voter models on heterogeneous networks.
V. Sood, Tibor Antal, and S. Redner
Physical Review E 77, 041121
(April 22, 2008)

Node similarity within subgraphs of protein interaction networks.
O. Penner, V. Sood, G. Musso, K. Baskerville, P. Grassberger, and M. Paczuski
Physica A, 387(14):3801-10
(March 10, 2008)

Complex network analysis of state spaces for random boolean networks.
Amer Shreim, Andrew Berdahl, Vishal Sood, Peter Grassberger, and Maya Paczuski
New Journal of Physics 10, 013028
(January 23, 2008)

Link and subgraph likelihoods in random undirected networks with fixed and partially fixed degree sequences.
Jacob G. Foster, David V. Foster, Peter Grassberger, and Maya Paczuski
Physical Review E 76, 046112
(October 19, 2007)

Graph animals, subgraph sampling and motif search in large networks.
Kim Baskerville, Peter Grassberger, and Maya Paczuski.
Physical Review E 76, 036107
(September 11, 2007)

Localization transition of biased random walks on random networks.
Vishal Sood and Peter Grassberger
Physical Review Letters 99, 098701
(August 31, 2007)

Coexistence of self-organized criticality and intermittent turbulence in the solar corona.
Vadim M. Uritsky, Maya Paczuski, Joseph M. Davila, and Shaela I. Jones
Physical Review Letters 99, 025001
(July 11, 2007)

Network analysis of the state space of discrete dynamical systems.
Amer Shreim, Peter Grassberger, Walter Nadler, Björn Samuelsson, Joshua E.S. Socolar, and Maya Paczuski
Physical Review Letters 98, 198701
(May 8, 2007)

Self-organized criticality and intermittent turbulence in an MHD current sheet with a threshold instability.
Alexander J. Klimas, Vadim M. Uritsky, and Maya Paczuski
(May 1, 2007)

Scaling and universality in rock fracture.
Jörn Davidsen, Sergei Stanchits, and Georg Dresen
Physical Review Letters 98, 125502
(March 22, 2007)

Subgraph ensembles and motif discovery using an alternative heuristic for graph isomorphism.
Kim Baskerville, and Maya Paczuski
Physical Review E 74, 051903
(November 3, 2006)

Earthquake recurrence as a record breaking process.
Jörn Davidsen, Peter Grassberger, and Maya Paczuski
Geophysical Research Letters 33, L11304
(June 6, 2006)